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LOC103151520 HMG box-containing protein 1-like [ Poecilia formosa (Amazon molly) ]

Gene ID: 103151520, updated on 28-Dec-2023

Summary

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Gene symbol
LOC103151520
Gene description
HMG box-containing protein 1-like
See related
Ensembl:ENSPFOG00000012271
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800223.1 (322687..331394, complement)

NW_006800223.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 13 member 4 Neighboring gene cytochrome c oxidase assembly factor 6 homolog Neighboring gene protein tyrosine phosphatase receptor type Z1b Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma Neighboring gene anoctamin 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800223.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box-containing protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800223.1 Reference Poecilia_formosa-5.1.2

    Range
    322687..331394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007571632.2 → XP_007571694.1  HMG box-containing protein 1-like isoform X1

    UniProtKB/TrEMBL
    A0A087Y2T4
    Related
    ENSPFOP00000012337.2, ENSPFOT00000012354.2
    Conserved Domains (2) summary
    cd01388
    Location:428 → 499
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08517
    Location:225 → 341
    AXH; Ataxin-1 and HBP1 module (AXH)

  2. XM_007571633.2 → XP_007571695.1  HMG box-containing protein 1-like isoform X2

    Conserved Domains (2) summary
    cd01388
    Location:411 → 482
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam08517
    Location:208 → 324
    AXH; Ataxin-1 and HBP1 module (AXH)
Nucleotide Protein
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