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TSEN2 tRNA splicing endonuclease subunit 2 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103086567, updated on 11-Mar-2024

Summary

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Gene symbol
TSEN2
Gene description
tRNA splicing endonuclease subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006788335.1 (203697..241553)

NW_006788335.1Genomic Context describing neighboring genes Neighboring gene peroxisome proliferator activated receptor gamma Neighboring gene MKRN2 opposite strand Neighboring gene makorin ring finger protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006788335 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA-intron endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA-type intron splice site recognition and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of tRNA-intron endonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA-splicing endonuclease subunit Sen2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006788335.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    203697..241553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007461551.1 → XP_007461613.1  tRNA-splicing endonuclease subunit Sen2

    UniProtKB/TrEMBL
    A0A340XJL3
    Conserved Domains (3) summary
    COG1676
    Location:259 → 426
    SEN2; tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
    pfam01974
    Location:340 → 423
    tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain
    pfam02778
    Location:277 → 330
    tRNA_int_endo_N; tRNA intron endonuclease, N-terminal domain

  2. XM_007461552.1 → XP_007461614.1  tRNA-splicing endonuclease subunit Sen2

    UniProtKB/TrEMBL
    A0A340XQI1
    Conserved Domains (2) summary
    COG1676
    Location:296 → 400
    SEN2; tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
    pfam01974
    Location:314 → 397
    tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain

  3. XM_007461553.1 → XP_007461615.1  tRNA-splicing endonuclease subunit Sen2

    UniProtKB/TrEMBL
    A0A340XRE3
    Conserved Domains (3) summary
    COG1676
    Location:203 → 370
    SEN2; tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
    pfam01974
    Location:284 → 367
    tRNA_int_endo; tRNA intron endonuclease, catalytic C-terminal domain
    pfam02778
    Location:221 → 274
    tRNA_int_endo_N; tRNA intron endonuclease, N-terminal domain
Nucleotide Protein
Heading Accession and Version

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