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zbtb40 zinc finger and BTB domain containing 40 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103039634, updated on 6-Jun-2024

Summary

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Gene symbol
zbtb40
Gene description
zinc finger and BTB domain containing 40
See related
EnsemblRapid:ENSAMXG00025028092
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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See zbtb40 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
14
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 24 NC_064431.1 (28452154..28470007)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 22 NC_035918.1 (12547650..12565023)

Chromosome 24 - NC_064431.1Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor class A domain containing 2 Neighboring gene ubiquitin specific peptidase 48 Neighboring gene probable transmembrane reductase CYB561D1 Neighboring gene ataxin 7-like 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064431.1 Reference AstMex3_surface

    Range
    28452154..28470007
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022682389.2 → XP_022538110.2  zinc finger and BTB domain-containing protein 40 isoform X1

    UniProtKB/TrEMBL
    A0A8T2KSG7
    Related
    ENSAMXP00025046560.1, ENSAMXT00025059252.1

  2. XM_049471773.1 → XP_049327730.1  zinc finger and BTB domain-containing protein 40 isoform X2

    UniProtKB/TrEMBL
    A0A8T2KSG7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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