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spsb4b splA/ryanodine receptor domain and SOCS box containing 4b [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103036184, updated on 11-Mar-2024

Summary

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Gene symbol
spsb4b
Gene description
splA/ryanodine receptor domain and SOCS box containing 4b
See related
EnsemblRapid:ENSAMXG00025027889
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
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Genomic context

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See spsb4b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
4
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 18 NC_064425.1 (43264907..43288829)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 1 NC_035897.1 (575026..578294)

Chromosome 18 - NC_064425.1Genomic Context describing neighboring genes Neighboring gene 2-phosphoxylose phosphatase 1 Neighboring gene solute carrier family 25 member 36-A Neighboring gene calsyntenin 2b Neighboring gene IgGFc-binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SPRY domain-containing SOCS box protein 4b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064425.1 Reference AstMex3_surface

    Range
    43264907..43288829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049467249.1 → XP_049323206.1  SPRY domain-containing SOCS box protein 4b

  2. XM_022684533.2 → XP_022540254.2  SPRY domain-containing SOCS box protein 4b

    Related
    ENSAMXP00025046063.1, ENSAMXT00025058657.1
Nucleotide Protein
Heading Accession and Version

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