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galnt10 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103022003, updated on 11-Mar-2024

Summary

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Gene symbol
galnt10
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10)
See related
EnsemblRapid:ENSAMXG00025009076
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
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Genomic context

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See galnt10 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 17 NC_064424.1 (33981943..34030143)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 14 NC_035910.1 (22254128..22304782)

Chromosome 17 - NC_064424.1Genomic Context describing neighboring genes Neighboring gene reticulon-3-A Neighboring gene microfibrillar-associated protein 3-like Neighboring gene sap30-like Neighboring gene heart- and neural crest derivatives-expressed protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064424.1 Reference AstMex3_surface

    Range
    33981943..34030143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007236271.4 → XP_007236333.1  polypeptide N-acetylgalactosaminyltransferase 10

    UniProtKB/TrEMBL
    A0A8B9GQT5, W5JZU5
    Related
    ENSAMXP00025012610.1, ENSAMXT00025017488.1
    Conserved Domains (2) summary
    cd02510
    Location:142 → 437
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:453 → 581
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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