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NOVA1-DT NOVA1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 102725045, updated on 17-Sep-2024

Summary

Official Symbol
NOVA1-DTprovided by HGNC
Official Full Name
NOVA1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:19827
See related
Ensembl:ENSG00000257842 AllianceGenome:HGNC:19827
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf22; LINC02588; NOVA1-AS1
Expression
Low expression observed in reference dataset See more
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Genomic context

See NOVA1-DT in Genome Data Viewer
Location:
14q12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (26598647..26806467)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (20796544..21004357)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (27067853..27275673)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370418 Neighboring gene NANOG hESC enhancer GRCh37_chr14:26863472-26864165 Neighboring gene NOVA alternative splicing regulator 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:27147383-27148128 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:27260120-27260628 Neighboring gene long intergenic non-protein coding RNA 2294 Neighboring gene long intergenic non-protein coding RNA 2293 Neighboring gene uncharacterized LOC124903296 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:27310618-27311817

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • NOVA1 antisense RNA 1 (head to head)
  • NOVA1 antisense RNA 1 (non-protein coding)
  • long intergenic non-protein coding RNA 2588

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147061.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL079343, AL132718
    Related
    ENST00000671020.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    26598647..26806467
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    20796544..21004357
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)