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HOMER3-AS1 HOMER3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 102724360, updated on 23-Nov-2021

Summary

Official Symbol
HOMER3-AS1provided by HGNC
Official Full Name
HOMER3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53775
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in spleen (RPKM 3.4), kidney (RPKM 0.6) and 18 other tissues See more
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Genomic context

See HOMER3-AS1 in Genome Data Viewer
Location:
19p13.11
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (18940254..18946831)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (19051063..19057640)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene COPI coat complex subunit epsilon Neighboring gene DEAD-box helicase 49 Neighboring gene homer scaffold protein 3 Neighboring gene uncharacterized LOC107985268 Neighboring gene RNA, 7SL, cytoplasmic 70, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134912.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BF511074, CF127232, HY133933, HY154431
  2. NR_134913.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at an internal exon compared to variant 1.
    Source sequence(s)
    BF511074, DA366162, HY133933

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    18940254..18946831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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