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CLEC4OP C-type lectin domain family 4 member O, pseudogene [ Homo sapiens (human) ]

Gene ID: 102724279, updated on 25-Oct-2022

Summary

Official Symbol
CLEC4OPprovided by HGNC
Official Full Name
C-type lectin domain family 4 member O, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:52651
See related
Ensembl:ENSG00000291059 AllianceGenome:HGNC:52651
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CLEC4O; LINC01835
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See CLEC4OP in Genome Data Viewer
Location:
19p13.12
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (15851993..15864924, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (15980190..15993158, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (15962803..15975734, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 861, pseudogene Neighboring gene collagen alpha-1(I) chain-like Neighboring gene urothelial cancer associated 1 Neighboring gene cytochrome P450 family 4 subfamily F member 36, pseudogene Neighboring gene cytochrome P450 family 4 subfamily F member 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

Other Names

  • C-type lectin domain family 4 member O
  • long intergenic non-protein coding RNA 1835

Clone Names

  • AC004791.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171052.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004791
    Related
    ENST00000589345.7
  2. NR_171053.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC004791
    Related
    ENST00000588182.4

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    15851993..15864924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    15980190..15993158 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001302493.2: Suppressed sequence

    Description
    NM_001302493.2: This RefSeq was removed because it is now thought that this gene does encode a protein.