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LINC01900 long intergenic non-protein coding RNA 1900 [ Homo sapiens (human) ]

Gene ID: 102724208, updated on 22-Oct-2024

Summary

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Official Symbol
LINC01900provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1900provided by HGNC
Primary source
HGNC:HGNC:52719
See related
Ensembl:ENSG00000265758 AllianceGenome:HGNC:52719
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01900 in Genome Data Viewer
Location:
18q11.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (21981094..21994977)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (22166124..22228543)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372016 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:19490742-19491339 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:19513802-19514448 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr18:19514449-19515095 Neighboring gene RNA, 5S ribosomal pseudogene 451 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:19571122-19571994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:19632111-19632703 Neighboring gene RNA, U7 small nuclear 17 pseudogene Neighboring gene Sharpr-MPRA regulatory region 2921 Neighboring gene Sharpr-MPRA regulatory region 2149 Neighboring gene uncharacterized LOC124904259 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:19667623-19667795 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:19676960-19677169

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    21981094..21994977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001753529.2 RNA Sequence

    Related
    ENST00000716237.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    22166124..22228543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088235.1 RNA Sequence

  2. XR_007088234.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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