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LINC02542 long intergenic non-protein coding RNA 2542 [ Homo sapiens (human) ]

Gene ID: 102724168, updated on 25-Jan-2022


Official Symbol
LINC02542provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2542provided by HGNC
Primary source
See related
Gene type
RefSeq status
Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Biased expression in salivary gland (RPKM 1.6), gall bladder (RPKM 0.5) and 12 other tissues See more
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Genomic context

See LINC02542 in Genome Data Viewer
Exon count:
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (81843781..82101765, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (82553498..82811482, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377873 Neighboring gene long intergenic non-protein coding RNA 1526 Neighboring gene uncharacterized LOC107986617 Neighboring gene Sharpr-MPRA regulatory region 11142 Neighboring gene inhibitor of Bruton tyrosine kinase Neighboring gene RNA, U6 small nuclear 130, pseudogene Neighboring gene single stranded DNA binding protein 2 pseudogene

Genomic regions, transcripts, and products


  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.


  1. NR_149134.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355294, DB182239
  2. NR_149135.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355294, AL360157, DA443454
  3. NR_149136.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355294, AL360157

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly


  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    81843781..82101765 complement
    GenBank, FASTA, Sequence Viewer (Graphics)
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