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pabpc1l poly(A) binding protein, cytoplasmic 1-like [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102696874, updated on 10-Mar-2024

Summary

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Gene symbol
pabpc1l
Gene description
poly(A) binding protein, cytoplasmic 1-like
See related
Ensembl:ENSLOCG00000007519
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: LG18
Exon count:
16
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG18 NC_023196.1 (15279141..15289806)

Linkage Group LG18 - NC_023196.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107079602 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide a Neighboring gene cytochrome c oxidase subunit 6C-1 Neighboring gene translocase of outer mitochondrial membrane 34

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023196.1 Chromosome LG18 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
embryonic polyadenylate-binding protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023196.1 Reference LepOcu1 Primary Assembly

    Range
    15279141..15289806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015365115.1 → XP_015220601.1  embryonic polyadenylate-binding protein-like isoform X2

    UniProtKB/TrEMBL
    W5ML68
    Conserved Domains (7) summary
    TIGR01628
    Location:11 → 616
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12378
    Location:12 → 91
    RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
    cd12379
    Location:97 → 172
    RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
    cd12380
    Location:190 → 269
    RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
    cd12381
    Location:293 → 370
    RRM4_I_PABPs; RNA recognition motif 4 in type I polyadenylate-binding proteins
    pfam00658
    Location:548 → 615
    PABP; Poly-adenylate binding protein, unique domain
    pfam16885
    Location:374 → 461
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term

  2. XM_015365114.1 → XP_015220600.1  embryonic polyadenylate-binding protein-like isoform X1

    UniProtKB/TrEMBL
    W5ML68
    Conserved Domains (7) summary
    TIGR01628
    Location:11 → 617
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12378
    Location:12 → 91
    RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
    cd12379
    Location:97 → 172
    RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
    cd12380
    Location:190 → 269
    RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
    cd12381
    Location:293 → 370
    RRM4_I_PABPs; RNA recognition motif 4 in type I polyadenylate-binding proteins
    pfam00658
    Location:549 → 616
    PABP; Poly-adenylate binding protein, unique domain
    pfam16885
    Location:374 → 461
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term

  3. XM_015365113.1 → XP_015220599.1  embryonic polyadenylate-binding protein-like isoform X1

    UniProtKB/TrEMBL
    W5ML68
    Related
    ENSLOCP00000009127.1, ENSLOCT00000009138.1
    Conserved Domains (7) summary
    TIGR01628
    Location:11 → 617
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12378
    Location:12 → 91
    RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
    cd12379
    Location:97 → 172
    RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
    cd12380
    Location:190 → 269
    RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
    cd12381
    Location:293 → 370
    RRM4_I_PABPs; RNA recognition motif 4 in type I polyadenylate-binding proteins
    pfam00658
    Location:549 → 616
    PABP; Poly-adenylate binding protein, unique domain
    pfam16885
    Location:374 → 461
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term

  4. XM_015365112.1 → XP_015220598.1  embryonic polyadenylate-binding protein-like isoform X1

    UniProtKB/TrEMBL
    W5ML68
    Conserved Domains (7) summary
    TIGR01628
    Location:11 → 617
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12378
    Location:12 → 91
    RRM1_I_PABPs; RNA recognition motif 1 in type I polyadenylate-binding proteins
    cd12379
    Location:97 → 172
    RRM2_I_PABPs; RNA recognition motif 2 found in type I polyadenylate-binding proteins
    cd12380
    Location:190 → 269
    RRM3_I_PABPs; RNA recognition motif 3 found in type I polyadenylate-binding proteins
    cd12381
    Location:293 → 370
    RRM4_I_PABPs; RNA recognition motif 4 in type I polyadenylate-binding proteins
    pfam00658
    Location:549 → 616
    PABP; Poly-adenylate binding protein, unique domain
    pfam16885
    Location:374 → 461
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
Nucleotide Protein
Heading Accession and Version

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