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nalcn sodium leak channel, non-selective [ Lepisosteus oculatus (spotted gar) ]

Gene ID: 102695809, updated on 10-Mar-2024

Summary

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Gene symbol
nalcn
Gene description
sodium leak channel, non-selective
See related
Ensembl:ENSLOCG00000002812
Gene type
protein coding
RefSeq status
MODEL
Organism
Lepisosteus oculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG17
Exon count:
47
Annotation release Status Assembly LG Location
101 current LepOcu1 (GCF_000242695.1) LG17 NC_023195.1 (2941702..3100009)

Linkage Group LG17 - NC_023195.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 14 Neighboring gene uncharacterized LOC107079413 Neighboring gene integrin, beta-like 1 Neighboring gene phospholipase D1-like Neighboring gene transmembrane O-mannosyltransferase targeting cadherins 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_023195.1 Chromosome LG17 Reference LepOcu1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic cation channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium leak channel non-selective protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference LepOcu1 Primary Assembly

Genomic

  1. NC_023195.1 Reference LepOcu1 Primary Assembly

    Range
    2941702..3100009
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006638902.2 → XP_006638965.1  sodium leak channel non-selective protein isoform X4

    Conserved Domains (2) summary
    pfam00520
    Location:1234 → 1457
    Ion_trans; Ion transport protein
    pfam10688
    Location:1265 → 1405
    Imp-YgjV; Bacterial inner membrane protein

  2. XM_015363454.1 → XP_015218940.1  sodium leak channel non-selective protein isoform X1

    UniProtKB/TrEMBL
    W5M4R4
    Related
    ENSLOCP00000003372.1, ENSLOCT00000003379.1
    Conserved Domains (2) summary
    pfam00520
    Location:1259 → 1482
    Ion_trans; Ion transport protein
    pfam10688
    Location:1290 → 1430
    Imp-YgjV; Bacterial inner membrane protein

  3. XM_006638901.2 → XP_006638964.1  sodium leak channel non-selective protein isoform X3

    Conserved Domains (2) summary
    pfam00520
    Location:1259 → 1482
    Ion_trans; Ion transport protein
    pfam10688
    Location:1290 → 1430
    Imp-YgjV; Bacterial inner membrane protein

  4. XM_015363458.1 → XP_015218944.1  sodium leak channel non-selective protein isoform X5

    Conserved Domains (2) summary
    pfam00520
    Location:1230 → 1453
    Ion_trans; Ion transport protein
    pfam10688
    Location:1261 → 1401
    Imp-YgjV; Bacterial inner membrane protein

  5. XM_015363456.1 → XP_015218942.1  sodium leak channel non-selective protein isoform X2

    Conserved Domains (2) summary
    pfam00520
    Location:1254 → 1477
    Ion_trans; Ion transport protein
    pfam10688
    Location:1285 → 1425
    Imp-YgjV; Bacterial inner membrane protein

  6. XM_015363455.1 → XP_015218941.1  sodium leak channel non-selective protein isoform X1

    UniProtKB/TrEMBL
    W5M4R4
    Conserved Domains (2) summary
    pfam00520
    Location:1259 → 1482
    Ion_trans; Ion transport protein
    pfam10688
    Location:1290 → 1430
    Imp-YgjV; Bacterial inner membrane protein

  7. XM_015363457.1 → XP_015218943.1  sodium leak channel non-selective protein isoform X4

    Conserved Domains (2) summary
    pfam00520
    Location:1234 → 1457
    Ion_trans; Ion transport protein
    pfam10688
    Location:1265 → 1405
    Imp-YgjV; Bacterial inner membrane protein
Nucleotide Protein
Heading Accession and Version

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