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CJ186046Rik Riken cDNA CJ186046 gene [ Mus musculus (house mouse) ]

Gene ID: 102640971, updated on 17-Aug-2024

Summary

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Official Symbol
CJ186046Rikprovided by MGI
Official Full Name
Riken cDNA CJ186046 geneprovided by MGI
Primary source
MGI:MGI:5319478
See related
AllianceGenome:MGI:5319478
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Si; Six2as
Summary
Is expressed in cap mesenchyme; metanephros; nephrogenic interstitium; nephrogenic zone; and urinary system. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CJ186046Rik in Genome Data Viewer
Location:
17 E4; 17
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (85995923..86034449)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (85688494..85727021)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene SIX homeobox 3, opposite strand 1 Neighboring gene sine oculis-related homeobox 3 Neighboring gene sine oculis-related homeobox 2 Neighboring gene predicted gene, 41644 Neighboring gene predicted gene, 41645

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling. Thiagarajan RD, et al. BMC Genomics, 2011 Sep 5. PMID 21888672, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    85995923..86034449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001782258.3 RNA Sequence

  2. XR_001782255.3 RNA Sequence

  3. XR_001782256.3 RNA Sequence

  4. XR_001782257.3 RNA Sequence

  5. XR_877072.4 RNA Sequence

  6. XR_877073.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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