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Vamp9 vesicle-associated membrane protein 9 [ Mus musculus (house mouse) ]

Gene ID: 102639650, updated on 17-Aug-2024

Summary

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Official Symbol
Vamp9provided by MGI
Official Full Name
vesicle-associated membrane protein 9provided by MGI
Primary source
MGI:MGI:5595070
See related
Ensembl:ENSMUSG00000105078 AllianceGenome:MGI:5595070
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm35911
Summary
Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in exocytosis and vesicle fusion. Predicted to be part of SNARE complex. Orthologous to human VAMP9P (vesicle associated membrane protein 9, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5 E4; 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (100054101..100099508)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (99906242..99951649)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13713 Neighboring gene predicted gene, 38413 Neighboring gene STARR-seq mESC enhancer starr_13714 Neighboring gene STARR-seq mESC enhancer starr_13715 Neighboring gene predicted gene, 42126 Neighboring gene STARR-positive B cell enhancer mm9_chr5:100335210-100335511 Neighboring gene RIKEN cDNA 4930524J08 gene Neighboring gene STARR-seq mESC enhancer starr_13719 Neighboring gene heterogeneous nuclear ribonucleoprotein D Neighboring gene predicted gene, 42127

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
  2. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of SNARE complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC102639650

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378420.1 → NP_001365349.1  uncharacterized protein LOC102639650

    Status: VALIDATED

    Source sequence(s)
    AC022062
    UniProtKB/TrEMBL
    A0A1D5RLS7
    Related
    ENSMUSP00000148490.2, ENSMUST00000198837.3
    Conserved Domains (2) summary
    cd14824
    Location:5 → 119
    Longin; longin domain
    cl22856
    Location:125 → 191
    SNARE; SNARE motif

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    100054101..100099508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030254960.1 → XP_030110820.1  uncharacterized protein LOC102639650 isoform X2

    Conserved Domains (1) summary
    cl22856
    Location:52 → 118
    SNARE; SNARE motif

  2. XM_011249609.2 → XP_011247911.1  uncharacterized protein LOC102639650 isoform X3

    See identical proteins and their annotated locations for XP_011247911.1

    Conserved Domains (1) summary
    cl38905
    Location:5 → 116
    longin-like; Longin-like domains

  3. XM_011249608.3 → XP_011247910.1  uncharacterized protein LOC102639650 isoform X1

    See identical proteins and their annotated locations for XP_011247910.1

    Conserved Domains (1) summary
    cd14824
    Location:5 → 116
    Longin; longin domain
Nucleotide Protein
Heading Accession and Version

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