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Sox5os4 SRY (sex determining region Y)-box 5, opposite strand 4 [ Mus musculus (house mouse) ]

Gene ID: 102633928, updated on 8-Feb-2024

Summary

Official Symbol
Sox5os4provided by MGI
Official Full Name
SRY (sex determining region Y)-box 5, opposite strand 4provided by MGI
Primary source
MGI:MGI:3783128
See related
AllianceGenome:MGI:3783128
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm15686
Expression
Low expression observed in reference dataset See more
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Genomic context

See Sox5os4 in Genome Data Viewer
Location:
6 G3; 6 77.03 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (144705027..144705797)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (144759301..144760071)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene SRY (sex determining region Y)-box 5 Neighboring gene STARR-seq mESC enhancer starr_17748 Neighboring gene STARR-seq mESC enhancer starr_17751 Neighboring gene predicted gene, 38531 Neighboring gene STARR-seq mESC enhancer starr_17756 Neighboring gene STARR-seq mESC enhancer starr_17757 Neighboring gene STARR-seq mESC enhancer starr_17758 Neighboring gene STARR-positive B cell enhancer ABC_E10417 Neighboring gene STARR-positive B cell enhancer mm9_chr6:144637695-144637995 Neighboring gene STARR-seq mESC enhancer starr_17759 Neighboring gene SRY (sex determining region Y)-box 5, opposite strand 3 Neighboring gene STARR-positive B cell enhancer mm9_chr6:144788652-144788953 Neighboring gene STARR-seq mESC enhancer starr_17760 Neighboring gene predicted gene, 32124 Neighboring gene predicted gene, 22792 Neighboring gene predicted gene, 20124

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    144705027..144705797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_378133.3 RNA Sequence

  2. XR_378134.3 RNA Sequence