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Gm30074 predicted gene, 30074 [ Mus musculus (house mouse) ]

Gene ID: 102631843, updated on 17-Aug-2024

Summary

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Official Symbol
Gm30074provided by MGI
Official Full Name
predicted gene, 30074provided by MGI
Primary source
MGI:MGI:5589233
See related
AllianceGenome:MGI:5589233
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 2.1), genital fat pad adult (RPKM 0.9) and 7 other tissues See more
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Genomic context

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See Gm30074 in Genome Data Viewer
Location:
3 C; 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (52078491..52087509, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (52171081..52180088, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:51440808-51440917 Neighboring gene STARR-seq mESC enhancer starr_07621 Neighboring gene STARR-seq mESC enhancer starr_07622 Neighboring gene STARR-seq mESC enhancer starr_07623 Neighboring gene STARR-seq mESC enhancer starr_07624 Neighboring gene predicted gene, 38247 Neighboring gene microsomal glutathione S-transferase 2 Neighboring gene VISTA enhancer mm1010 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:51549117-51549270 Neighboring gene mastermind like transcriptional coactivator 3 Neighboring gene predicted gene, 46803 Neighboring gene VISTA enhancer mm1452 Neighboring gene STARR-seq mESC enhancer starr_07625 Neighboring gene VISTA enhancer mm1388 Neighboring gene STARR-seq mESC enhancer starr_07626 Neighboring gene STARR-positive B cell enhancer ABC_E1019 Neighboring gene STARR-positive B cell enhancer ABC_E7911 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:51839623-51839732 Neighboring gene STARR-positive B cell enhancer ABC_E3430 Neighboring gene STARR-seq mESC enhancer starr_07632 Neighboring gene STARR-seq mESC enhancer starr_07634 Neighboring gene olfactory receptor family 14 subfamily M member 1, pseudogene 1 Neighboring gene STARR-positive B cell enhancer mm9_chr3:52066309-52066610 Neighboring gene STARR-positive B cell enhancer ABC_E9077 Neighboring gene predicted gene, 30125 Neighboring gene STARR-positive B cell enhancer mm9_chr3:52135696-52135996 Neighboring gene forkhead box O1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    52078491..52087509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_375647.5 RNA Sequence

  2. XR_867257.4 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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