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LOC102553678 uncharacterized LOC102553678 [ Rattus norvegicus (Norway rat) ]

Gene ID: 102553678, updated on 17-Aug-2024

Summary

Symbol
LOC102553678provided by RGD
Full Name
uncharacterized LOC102553678provided by RGD
Primary source
RGD:7593775
See related
AllianceGenome:RGD:7593775
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 25.4), Lung (RPKM 16.6) and 9 other tissues See more
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Genomic context

Location:
4q24
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (84701798..84706903, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (83364643..83376599, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (84420047..84423535, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene carboxypeptidase, vitellogenic-like Neighboring gene uncharacterized LOC120102282 Neighboring gene chimerin 2 Neighboring gene eukaryotic translation elongation factor 1 beta 2, pseudogene 1 Neighboring gene proline rich 15

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    84701798..84706903 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010066158.1 RNA Sequence

  2. XR_010066157.1 RNA Sequence

  3. XR_010066156.1 RNA Sequence