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CHSY1 chondroitin sulfate synthase 1 [ Tupaia chinensis (Chinese tree shrew) ]

Gene ID: 102495682, updated on 10-Mar-2024

Summary

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Gene symbol
CHSY1
Gene description
chondroitin sulfate synthase 1
Locus tag
TREES_T100003496
Gene type
protein coding
RefSeq status
MODEL
Organism
Tupaia chinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Scandentia; Tupaiidae; Tupaia
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current TupChi_1.0 (GCF_000334495.1) Unplaced Scaffold NW_006200341.1 (801440..890399)

NW_006200341.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene selenoprotein S Neighboring gene leucine rich repeat kinase 1 Neighboring gene aldehyde dehydrogenase 1 family member A3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006200341 Unplaced Scaffold Reference TupChi_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: chondroitin sulfate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tupaia chinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TupChi_1.0

Genomic

  1. NW_006200341.1 Reference TupChi_1.0

    Range
    801440..890399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006172212.3 → XP_006172274.1  LOW QUALITY PROTEIN: chondroitin sulfate synthase 1

    UniProtKB/TrEMBL
    L8YEN7
    Conserved Domains (2) summary
    pfam05679
    Location:158 → 697
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:7 → 228
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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