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LINC01948 long intergenic non-protein coding RNA 1948 [ Homo sapiens (human) ]

Gene ID: 102467147, updated on 10-Oct-2023

Summary

Official Symbol
LINC01948provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1948provided by HGNC
Primary source
HGNC:HGNC:52772
See related
Ensembl:ENSG00000248727 AllianceGenome:HGNC:52772
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 1.4), salivary gland (RPKM 1.0) and 12 other tissues See more
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Genomic context

See LINC01948 in Genome Data Viewer
Location:
5q11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (56457795..56481769, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (57285710..57309735, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (55753622..55777596, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378977 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:55595955-55596167 Neighboring gene RNA, U6atac small nuclear 2, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16020 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:55646043-55647242 Neighboring gene HNF1 motif-containing MPRA enhancer 104 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 17 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22564 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22565 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:55810478-55810978 Neighboring gene ribosomal protein L26 pseudogene 19 Neighboring gene chromosome 5 putative open reading frame 67 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:55830028-55830580 Neighboring gene MPRA-validated peak5248 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22567 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22568 Neighboring gene VISTA enhancer hs1638

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104664.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008391, BX484633
    Related
    ENST00000506836.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    56457795..56481769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    57285710..57309735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)