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LOC102443842 sodium-dependent serotonin transporter-like [ Pelodiscus sinensis (Chinese soft-shelled turtle) ]

Gene ID: 102443842, updated on 9-Nov-2023

Summary

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Gene symbol
LOC102443842
Gene description
sodium-dependent serotonin transporter-like
See related
Ensembl:ENSPSIG00000016226
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelodiscus sinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus
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Genomic context

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See LOC102443842 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current PelSin_1.0 (GCF_000230535.1) Unplaced Scaffold NW_005857032.1 (359725..388714)

NW_005857032.1Genomic Context describing neighboring genes Neighboring gene KIAA1671 ortholog Neighboring gene U1 spliceosomal RNA Neighboring gene small G protein signaling modulator 1 Neighboring gene ankyrin repeat domain 13A Neighboring gene GIT ArfGAP 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005857032 Unplaced Scaffold Reference PelSin_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serotonin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serotonin:sodium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in serotonin uptake IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: sodium-dependent serotonin transporter-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelodiscus sinensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PelSin_1.0 Primary Assembly

Genomic

  1. NW_005857032.1 Reference PelSin_1.0 Primary Assembly

    Range
    359725..388714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014577096.2 → XP_014432582.1  LOW QUALITY PROTEIN: sodium-dependent serotonin transporter-like

    UniProtKB/TrEMBL
    K7GDF5
    Related
    ENSPSIP00000018316.1, ENSPSIT00000018402.1
    Conserved Domains (1) summary
    cl00456
    Location:38 → 570
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein
Heading Accession and Version

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