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zranb1b zinc finger, RAN-binding domain containing 1b [ Haplochromis burtoni (Burton's mouthbrooder) ]

Gene ID: 102313300, updated on 10-Mar-2024

Summary

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Gene symbol
zranb1b
Gene description
zinc finger, RAN-binding domain containing 1b
See related
Ensembl:ENSHBUG00000017048
Gene type
protein coding
RefSeq status
MODEL
Organism
Haplochromis burtoni
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Haplochromis
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current NCSU_Asbu1 (GCF_018398535.1) Unplaced Scaffold NW_024582368.1 (4266194..4288830, complement)
101 previous assembly AstBur1.0 (GCF_000239415.1) Unplaced Scaffold NW_005179406.1 (4221670..4243813, complement)

NW_024582368.1Genomic Context describing neighboring genes Neighboring gene testis expressed 36 Neighboring gene C-terminal binding protein 2a Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene EEF1A lysine methyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K29-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K33-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase zranb1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Haplochromis burtoni Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NCSU_Asbu1 Primary Assembly

Genomic

  1. NW_024582368.1 Reference NCSU_Asbu1 Primary Assembly

    Range
    4266194..4288830 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005914180.3 → XP_005914242.1  ubiquitin thioesterase zranb1-B isoform X1

    UniProtKB/TrEMBL
    A0A3Q2VS57, A0A3Q2W248
    Related
    ENSHBUP00000015132.1
    Conserved Domains (4) summary
    smart00547
    Location:219 → 242
    ZnF_RBZ; Zinc finger domain
    sd00025
    Location:89 → 108
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00029
    Location:41 → 60
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:527 → 675
    OTU; OTU-like cysteine protease

  2. XM_005914181.3 → XP_005914243.1  ubiquitin thioesterase zranb1-B isoform X2

    See identical proteins and their annotated locations for XP_005914243.1

    UniProtKB/TrEMBL
    A0A3Q2W248
    Conserved Domains (4) summary
    smart00547
    Location:186 → 209
    ZnF_RBZ; Zinc finger domain
    sd00025
    Location:56 → 75
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00029
    Location:8 → 27
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:494 → 642
    OTU; OTU-like cysteine protease

  3. XM_005914182.3 → XP_005914244.1  ubiquitin thioesterase zranb1-B isoform X2

    See identical proteins and their annotated locations for XP_005914244.1

    UniProtKB/TrEMBL
    A0A3Q2W248
    Related
    ENSHBUP00000015118.1
    Conserved Domains (4) summary
    smart00547
    Location:186 → 209
    ZnF_RBZ; Zinc finger domain
    sd00025
    Location:56 → 75
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00029
    Location:8 → 27
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam02338
    Location:494 → 642
    OTU; OTU-like cysteine protease
Nucleotide Protein
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