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usp12b ubiquitin specific peptidase 12b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102237191, updated on 10-Mar-2024

Summary

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Gene symbol
usp12b
Gene description
ubiquitin specific peptidase 12b
See related
Ensembl:ENSXMAG00000026126
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 14 NC_036456.1 (8038900..8061527, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372341.1 (266473..280670)

Chromosome 14 - NC_036456.1Genomic Context describing neighboring genes Neighboring gene NHS-like 2 Neighboring gene E3 ubiquitin-protein ligase TRIM21-like Neighboring gene Rho GTPase activating protein 36 Neighboring gene RAS-like, family 11, member A Neighboring gene guanylyl cyclase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036456.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    8038900..8061527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023346217.1 → XP_023201985.1  ubiquitin carboxyl-terminal hydrolase 12-like

    UniProtKB/TrEMBL
    A0A3B5PYY1, A0A3B5QFH3
    Related
    ENSXMAP00000024843.1, ENSXMAT00000036314.1
    Conserved Domains (1) summary
    cd02663
    Location:40 → 380
    Peptidase_C19G; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein Strain
Heading Accession and Version

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