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eppk1 epiplakin 1 [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102222996, updated on 10-Mar-2024

Summary

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Gene symbol
eppk1
Gene description
epiplakin 1
See related
Ensembl:ENSXMAG00000027496
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 13 NC_036455.1 (15209524..15234594)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005373299.1 (4295..12569)

Chromosome 13 - NC_036455.1Genomic Context describing neighboring genes Neighboring gene plectin a Neighboring gene uncharacterized LOC111610572 Neighboring gene uncharacterized LOC102223516 Neighboring gene F-box and leucine-rich repeat protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epiplakin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036455.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    15209524..15234594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023345198.1 → XP_023200966.1  epiplakin isoform X1

    UniProtKB/TrEMBL
    A0A3B5RF36
    Conserved Domains (2) summary
    smart00250
    Location:89 → 123
    PLEC; Plectin repeat
    pfam00681
    Location:2347 → 2387
    Plectin; Plectin repeat

  2. XM_023345197.1 → XP_023200965.1  epiplakin isoform X1

    UniProtKB/TrEMBL
    A0A3B5RF36
    Related
    ENSXMAP00000040841.1, ENSXMAT00000027366.1
    Conserved Domains (2) summary
    smart00250
    Location:89 → 123
    PLEC; Plectin repeat
    pfam00681
    Location:2347 → 2387
    Plectin; Plectin repeat

  3. XM_023345199.1 → XP_023200967.1  epiplakin isoform X2

    Conserved Domains (2) summary
    smart00250
    Location:89 → 123
    PLEC; Plectin repeat
    pfam00681
    Location:2347 → 2387
    Plectin; Plectin repeat
Nucleotide Protein Strain
Heading Accession and Version

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