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slc6a4b solute carrier family 6 member 4b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 102218142, updated on 10-Mar-2024

Summary

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Gene symbol
slc6a4b
Gene description
solute carrier family 6 member 4b
See related
Ensembl:ENSXMAG00000013966
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See slc6a4b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 12 NC_036454.1 (18169117..18176755)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372944.1 (25467..32884)

Chromosome 12 - NC_036454.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene small G protein signaling modulator 1a Neighboring gene uncharacterized LOC111610292 Neighboring gene uncharacterized LOC111610275 Neighboring gene ankyrin repeat domain 13A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serotonin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serotonin:sodium:chloride symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in serotonin uptake IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-dependent serotonin transporter-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036454.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    18169117..18176755
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005814246.2 → XP_005814303.1  sodium-dependent serotonin transporter-like

    UniProtKB/TrEMBL
    M4AHR6
    Related
    ENSXMAP00000014010.2, ENSXMAT00000014029.2
    Conserved Domains (1) summary
    cl00456
    Location:32 → 568
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases