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thumpd3 THUMP domain containing 3 [ Pundamilia nyererei ]

Gene ID: 102210450, updated on 10-Mar-2024

Summary

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Gene symbol
thumpd3
Gene description
THUMP domain containing 3
See related
Ensembl:ENSPNYG00000006918
Gene type
protein coding
RefSeq status
MODEL
Organism
Pundamilia nyererei
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Pundamilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current PunNye1.0 (GCF_000239375.1) Unplaced Scaffold NW_005187511.1 (993214..1004114)

NW_005187511.1Genomic Context describing neighboring genes Neighboring gene RAD18 E3 ubiquitin protein ligase Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene prostaglandin I2 synthase Neighboring gene potassium voltage-gated channel subfamily B member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005187511.1 Unplaced Scaffold Reference PunNye1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pundamilia nyererei Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PunNye1.0

Genomic

  1. NW_005187511.1 Reference PunNye1.0

    Range
    993214..1004114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005741391.1 → XP_005741448.1  THUMP domain-containing protein 3 isoform X2

    See identical proteins and their annotated locations for XP_005741448.1

    UniProtKB/TrEMBL
    A0A3B4FIX0
    Related
    ENSPNYP00000009126.1, ENSPNYT00000009336.1
    Conserved Domains (2) summary
    cd11715
    Location:38 → 267
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    cl17173
    Location:274 → 456
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_005741390.2 → XP_005741447.1  THUMP domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A9Y3VRM0
    Conserved Domains (3) summary
    cd11715
    Location:43 → 272
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    COG0116
    Location:39 → 468
    RlmL; 23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:279 → 461
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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