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NSD1 nuclear receptor binding SET domain protein 1 [ Geospiza fortis (medium ground-finch) ]

Gene ID: 102044678, updated on 10-Mar-2024

Summary

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Gene symbol
NSD1
Gene description
nuclear receptor binding SET domain protein 1
See related
Ensembl:ENSGFOG00000002941
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See NSD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054308.1 (9192700..9254876)

NW_005054308.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 346 Neighboring gene fibroblast growth factor receptor 4 Neighboring gene lateral signaling target protein 2 homolog Neighboring gene RAB24, member RAS oncogene family Neighboring gene PRELI domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054308 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054308.1 Reference GeoFor_1.0

    Range
    9192700..9254876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031055208.1 → XP_030911068.1  histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific

    UniProtKB/TrEMBL
    A0A8N5EI08
    Related
    ENSGFOP00000009059.1, ENSGFOT00000009352.1
    Conserved Domains (12) summary
    cd05838
    Location:1505 → 1599
    WHSC1_related; The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as ...
    PHA03247
    Location:2015 → 2620
    PHA03247; large tegument protein UL36; Provisional
    COG5034
    Location:1156 → 1337
    TNG2; Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
    cd15648
    Location:1296 → 1338
    PHD1_NSD1_2; PHD finger 1 found in nuclear receptor-binding SET domain-containing protein NSD1 and NSD2
    cd15650
    Location:1343 → 1389
    PHD2_NSD1; PHD finger 2 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1)
    cd15653
    Location:1390 → 1443
    PHD3_NSD1; PHD finger 3 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1)
    cd15656
    Location:1460 → 1499
    PHD4_NSD1; PHD finger 4 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1)
    cd15659
    Location:1871 → 1913
    PHD5_NSD1; PHD finger 5 found in nuclear receptor-binding SET domain-containing protein 1 (NSD1)
    pfam17907
    Location:1652 → 1690
    AWS; AWS domain
    pfam17982
    Location:1912 → 1961
    C5HCH; NSD Cys-His rich domain
    cd19210
    Location:1692 → 1833
    SET_NSD1; SET domain (including post-SET domain) found in nuclear receptor-binding SET domain-containing protein 1 (NSD1) and similar proteins
    cl02554
    Location:59 → 168
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
Nucleotide Protein
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