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Col4a1 collagen type IV alpha 1 chain [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102021412, updated on 10-Mar-2024

Summary

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Gene symbol
Col4a1
Gene description
collagen type IV alpha 1 chain
See related
Ensembl:ENSCLAG00000003263
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
58
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955404.1 (2196193..2327324)

NW_004955404.1Genomic Context describing neighboring genes Neighboring gene RAB20, member RAS oncogene family Neighboring gene collagen type IV alpha 2 chain Neighboring gene uncharacterized LOC106149123 Neighboring gene uncharacterized LOC106148864

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955404.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(IV) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955404.1 Reference ChiLan1.0 Primary Assembly

    Range
    2196193..2327324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013516808.1 → XP_013372262.1  collagen alpha-1(IV) chain

    Related
    ENSCLAP00000004583.1, ENSCLAT00000004669.1
    Conserved Domains (2) summary
    pfam01391
    Location:547 → 604
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1828 → 1938
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
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