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Trpv4 transient receptor potential cation channel subfamily V member 4 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102018566, updated on 10-Mar-2024

Summary

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Gene symbol
Trpv4
Gene description
transient receptor potential cation channel subfamily V member 4
See related
Ensembl:ENSCLAG00000010741
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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See Trpv4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955455.1 (8744865..8781644)

NW_004955455.1Genomic Context describing neighboring genes Neighboring gene trichoplein keratin filament binding Neighboring gene glycolipid transfer protein Neighboring gene uncharacterized LOC106149865 Neighboring gene family with sequence similarity 222 member A Neighboring gene uncharacterized LOC102019468

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955455.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in osmosensory signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transient receptor potential cation channel subfamily V member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955455.1 Reference ChiLan1.0 Primary Assembly

    Range
    8744865..8781644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013520488.1 → XP_013375942.1  transient receptor potential cation channel subfamily V member 4 isoform X2

    UniProtKB/TrEMBL
    A0A8C2VH90
    Conserved Domains (5) summary
    cd00204
    Location:238 → 390
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00520
    Location:558 → 730
    Ion_trans; Ion transport protein
    pfam09685
    Location:549 → 595
    DUF4870; Domain of unknown function (DUF4870)
    pfam12796
    Location:289 → 394
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:237 → 268
    ANK; ANK repeat [structural motif]

  2. XM_005396446.2 → XP_005396503.2  transient receptor potential cation channel subfamily V member 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C2VH90, A0A8C2VHC5
    Related
    ENSCLAP00000015624.1, ENSCLAT00000015786.1
    Conserved Domains (5) summary
    cd00204
    Location:238 → 390
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00520
    Location:558 → 730
    Ion_trans; Ion transport protein
    pfam09685
    Location:549 → 595
    DUF4870; Domain of unknown function (DUF4870)
    pfam12796
    Location:289 → 394
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:237 → 268
    ANK; ANK repeat [structural motif]

  3. XM_005396447.2 → XP_005396504.1  transient receptor potential cation channel subfamily V member 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C2VH90, A0A8C2VHC5
    Related
    ENSCLAP00000015623.1, ENSCLAT00000015785.1
    Conserved Domains (5) summary
    cd00204
    Location:238 → 390
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00520
    Location:558 → 730
    Ion_trans; Ion transport protein
    pfam09685
    Location:549 → 595
    DUF4870; Domain of unknown function (DUF4870)
    pfam12796
    Location:289 → 394
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:237 → 268
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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