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LOC101958833 ceramide synthase 3 [ Ictidomys tridecemlineatus (thirteen-lined ground squirrel) ]

Gene ID: 101958833, updated on 16-Nov-2023

Summary

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Gene symbol
LOC101958833
Gene description
ceramide synthase 3
Locus tag
H1C71_017624
See related
EnsemblRapid:ENSSTOG00015007692 EnsemblRapid:ENSSTOG00015007710
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictidomys tridecemlineatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys
Also known as
Cers3; Lins1
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
103 current HiC_Itri_2 (GCF_016881025.1) Unplaced Scaffold NW_024408640.1 (142971628..143128333, complement)
102 previous assembly SpeTri2.0 (GCF_000236235.1) Unplaced Scaffold NW_004936483.1 (3276519..3365054)

NW_024408640.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B1-like Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 17 Neighboring gene U6 spliceosomal RNA Neighboring gene heat shock protein HSP 90-alpha-like Neighboring gene ankyrin repeat and SOCS box containing 7 Neighboring gene aldehyde dehydrogenase 1 family member A3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingosine N-acyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ceramide synthase 3; protein Lines homolog 1
Names
lines homolog 1
protein Lines homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ictidomys tridecemlineatus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HiC_Itri_2 Primary Assembly

Genomic

  1. NW_024408640.1 Reference HiC_Itri_2 Primary Assembly

    Range
    142971628..143128333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040274713.1 → XP_040130647.1  protein Lines homolog 1 isoform X1

    Conserved Domains (2) summary
    smart00724
    Location:600 → 800
    TLC; TRAM, LAG1 and CLN8 homology domains
    cd00086
    Location:552 → 595
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  2. XM_040274712.1 → XP_040130646.1  protein Lines homolog 1 isoform X1

    Conserved Domains (2) summary
    smart00724
    Location:600 → 800
    TLC; TRAM, LAG1 and CLN8 homology domains
    cd00086
    Location:552 → 595
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  3. XM_040274715.1 → XP_040130649.1  protein Lines homolog 1 isoform X1

    Conserved Domains (2) summary
    smart00724
    Location:600 → 800
    TLC; TRAM, LAG1 and CLN8 homology domains
    cd00086
    Location:552 → 595
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  4. XM_040274714.1 → XP_040130648.1  protein Lines homolog 1 isoform X1

    Conserved Domains (2) summary
    smart00724
    Location:600 → 800
    TLC; TRAM, LAG1 and CLN8 homology domains
    cd00086
    Location:552 → 595
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

  5. XM_005320087.4 → XP_005320144.1  ceramide synthase 3 isoform X3

    UniProtKB/TrEMBL
    I3M4F7
    Related
    ENSSTOP00015009434.1, ENSSTOT00015010383.1
    Conserved Domains (2) summary
    cd00086
    Location:82 → 125
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03798
    Location:131 → 324
    TRAM_LAG1_CLN8; TLC domain

  6. XM_040274716.1 → XP_040130650.1  ceramide synthase 3 isoform X3

    UniProtKB/TrEMBL
    I3M4F7
    Conserved Domains (2) summary
    cd00086
    Location:82 → 125
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam03798
    Location:131 → 324
    TRAM_LAG1_CLN8; TLC domain

  7. XM_021722858.2 → XP_021578533.1  protein Lines homolog 1 isoform X2

    UniProtKB/TrEMBL
    I3M4G8
    Related
    ENSSTOP00015009460.1, ENSSTOT00015010409.1
    Conserved Domains (2) summary
    pfam14694
    Location:198 → 547
    LINES_N; Lines N-terminus
    pfam14695
    Location:717 → 753
    LINES_C; Lines C-terminus
Nucleotide Protein
Heading Accession and Version

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