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HMGCLL1 3-hydroxy-3-methylglutaryl-CoA lyase like 1 [ Chrysemys picta (Painted turtle) ]

Gene ID: 101931589, updated on 11-Apr-2024

Summary

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Gene symbol
HMGCLL1
Gene description
3-hydroxy-3-methylglutaryl-CoA lyase like 1
See related
Ensembl:ENSCPBG00000022071
Gene type
protein coding
RefSeq status
MODEL
Organism
Chrysemys picta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Chrysemys
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Chrysemys_picta_BioNano-3.0.4 (GCF_000241765.4) 3 NC_024220.2 (122786909..122891388, complement)
102 previous assembly Chrysemys_picta_bellii-3.0.3 (GCF_000241765.3) Unplaced Scaffold NW_007359885.1 (11375354..11503376, complement)

Chromosome 3 - NC_024220.2Genomic Context describing neighboring genes Neighboring gene hypocretin receptor 2 Neighboring gene GDNF family receptor alpha like Neighboring gene uncharacterized LOC122173557 Neighboring gene bone morphogenetic protein 5 Neighboring gene collagen type XXI alpha 1 chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylglutaryl-CoA lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ketone body biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic
Names
3-hydroxymethyl-3-methylglutaryl-CoA lyase L1
3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chrysemys picta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

Genomic

  1. NC_024220.2 Reference Chrysemys_picta_BioNano-3.0.4 Primary Assembly

    Range
    122786909..122891388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024101610.2 → XP_023957378.1  3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X4

    Conserved Domains (1) summary
    PLN02746
    Location:1 → 237
    PLN02746; hydroxymethylglutaryl-CoA lyase

  2. XM_005300203.3 → XP_005300260.1  3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X2

    Conserved Domains (1) summary
    PLN02746
    Location:42 → 295
    PLN02746; hydroxymethylglutaryl-CoA lyase

  3. XM_005300202.3 → XP_005300259.1  3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X1

    UniProtKB/TrEMBL
    A0A8C3ICG2
    Related
    ENSCPBP00000031452.1
    Conserved Domains (2) summary
    PLN02746
    Location:42 → 337
    PLN02746; hydroxymethylglutaryl-CoA lyase
    pfam00682
    Location:49 → 322
    HMGL-like; HMGL-like

  4. XM_042848826.1 → XP_042704760.1  3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic isoform X3

    Conserved Domains (1) summary
    cd07938
    Location:51 → 266
    DRE_TIM_HMGL; 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

RNA

  1. XR_002888141.2 RNA Sequence

Nucleotide Protein
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