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LINC02109 long intergenic non-protein coding RNA 2109 [ Homo sapiens (human) ]

Gene ID: 101929660, updated on 23-Nov-2021

Summary

Official Symbol
LINC02109provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2109provided by HGNC
Primary source
HGNC:HGNC:52964
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 3.2) See more
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Genomic context

See LINC02109 in Genome Data Viewer
Location:
5p13.3
Exon count:
9
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (29143503..29172975)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (29143610..29173082)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986410 Neighboring gene uncharacterized LOC101929645 Neighboring gene uncharacterized LOC105374699 Neighboring gene basal body orientation factor 1 pseudogene Neighboring gene long intergenic non-protein coding RNA 2064 Neighboring gene uncharacterized LOC105374702

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130777.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC112172, AK098570, BQ011117, DB048096

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    29143503..29172975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003571036.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    115886..145358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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