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LINC02198 long intergenic non-protein coding RNA 2198 [ Homo sapiens (human) ]

Gene ID: 101928885, updated on 10-Oct-2023

Summary

Official Symbol
LINC02198provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2198provided by HGNC
Primary source
HGNC:HGNC:53064
See related
AllianceGenome:HGNC:53064
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02198 in Genome Data Viewer
Location:
5q13.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (68967741..69029927, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (69790202..69852381, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (68263568..68325754, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene U8 small nucleolar RNA Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:68194494-68195693 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:68217653-68218234 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:68218235-68218815 Neighboring gene uncharacterized LOC105379015 Neighboring gene uncharacterized LOC107984116 Neighboring gene RN7SK pseudogene 251 Neighboring gene NFE2L2 motif-containing MPRA enhancer 182 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:68357823-68358534 Neighboring gene leucine rich repeat containing 3C pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr5:68370875-68371043 Neighboring gene SUMO2 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_130778.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093248

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    68967741..69029927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    69790202..69852381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)