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LOC101928708 uncharacterized LOC101928708 [ Homo sapiens (human) ]

Gene ID: 101928708, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101928708
Gene description
uncharacterized LOC101928708
See related
Ensembl:ENSG00000261095
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101928708 in Genome Data Viewer
Location:
16q24.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (87212115..87226430)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (93282557..93297320)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (87245721..87260036)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2181 Neighboring gene NANOG hESC enhancer GRCh37_chr16:87122126-87122775 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr16:87127447-87128373 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:87132609-87133324 Neighboring gene uncharacterized LOC105371394 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87165805-87166621 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:87173746-87174945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87183708-87184208 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87184209-87184709 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87193649-87194198 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:87195966-87197165 Neighboring gene MPRA-validated peak2654 silencer Neighboring gene Sharpr-MPRA regulatory region 1579 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87207420-87207920 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87207921-87208421 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87220006-87220856 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87269509-87270209 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87270210-87270909 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87275853-87276354 Neighboring gene uncharacterized LOC101928682 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:87312649-87313154 Neighboring gene ribosomal protein L39 pseudogene 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110939.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC136285
    Related
    ENST00000566092.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    87212115..87226430
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    93282557..93297320
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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