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LINC01209 long intergenic non-protein coding RNA 1209 [ Homo sapiens (human) ]

Gene ID: 101928684, updated on 10-Oct-2023

Summary

Official Symbol
LINC01209provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1209provided by HGNC
Primary source
HGNC:HGNC:49640
See related
Ensembl:ENSG00000228308 AllianceGenome:HGNC:49640
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
3q26.32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (176814155..176817001, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (179616595..179619441, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (176531943..176534789, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1208 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:176484349-176485548 Neighboring gene RNA, 5S ribosomal pseudogene 147 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:176544827-176545328 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:176545329-176545828 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:176755168-176756367 Neighboring gene Sharpr-MPRA regulatory region 5683 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:176759414-176759658 Neighboring gene MT-ND5 pseudogene 15 Neighboring gene TBL1XR1 antisense RNA 1 Neighboring gene TBL1X/Y related 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110819.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092920, BC041880
    Related
    ENST00000451289.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    176814155..176817001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    179616595..179619441 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)