Format

Send to:

Choose Destination

LINC02549 long intergenic non-protein coding RNA 2549 [ Homo sapiens (human) ]

Gene ID: 101928280, updated on 10-Dec-2019

Summary

Official Symbol
LINC02549provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2549provided by HGNC
Primary source
HGNC:HGNC:53584
See related
Ensembl:ENSG00000226497
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more

Genomic context

See LINC02549 in Genome Data Viewer
Location:
6q12
Exon count:
4
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (68226970..68329899, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (68936862..69039856, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723883 Neighboring gene uncharacterized LOC105377846 Neighboring gene uncharacterized LOC101928307 Neighboring gene Sharpr-MPRA regulatory region 12937 Neighboring gene adhesion G protein-coupled receptor B3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
The genetic aetiology of cannabis use initiation: a meta-analysis of genome-wide association studies and a SNP-based heritability estimation.
NHGRI GWA Catalog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_125854.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL593844, AL593854
    Related
    ENST00000445346.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    68226970..68329899 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center