Format

Send to:

Choose Destination

CASC17 cancer susceptibility 17 [ Homo sapiens (human) ]

Gene ID: 101928165, updated on 23-Nov-2021

Summary

Official Symbol
CASC17provided by HGNC
Official Full Name
cancer susceptibility 17provided by HGNC
Primary source
HGNC:HGNC:43911
See related
Ensembl:ENSG00000260785
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00600
Expression
Restricted expression toward testis (RPKM 1.2) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See CASC17 in Genome Data Viewer
Location:
17q24.3
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (71097774..71202179, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (69093915..69198320, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1467 Neighboring gene SERPINE1 mRNA binding protein 1 pseudogene Neighboring gene SOX9 enhancer cre1 Neighboring gene enhancer upstream of SOX9 Neighboring gene RNA, U7 small nuclear 155 pseudogene Neighboring gene SOX9 enhancer enh3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.
GeneReviews: Not available
Genome-wide association study identifies new prostate cancer susceptibility loci.
GeneReviews: Not available
Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.
GeneReviews: Not available
Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.
GeneReviews: Not available
Multiple newly identified loci associated with prostate cancer susceptibility.
GeneReviews: Not available
Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes.
GeneReviews: Not available

General gene information

Other Names

  • cancer susceptibility 17 (non-protein coding)
  • cancer susceptibility candidate 17 (non-protein coding)
  • long intergenic non-protein coding RNA 600

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104152.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005273, BC039327, BI459971
    Related
    ENST00000569074.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    71097774..71202179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center