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CASC17 cancer susceptibility 17 [ Homo sapiens (human) ]

Gene ID: 101928165, updated on 10-Oct-2023

Summary

Official Symbol
CASC17provided by HGNC
Official Full Name
cancer susceptibility 17provided by HGNC
Primary source
HGNC:HGNC:43911
See related
Ensembl:ENSG00000260785 AllianceGenome:HGNC:43911
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00600
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

See CASC17 in Genome Data Viewer
Location:
17q24.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (71097774..71202179, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (71970472..72074817, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (69093915..69198320, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904104 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:68983705-68984206 Neighboring gene VISTA enhancer hs1467 Neighboring gene SERPINE1 mRNA binding protein 1 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:69028546-69029302 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:69029303-69030057 Neighboring gene SOX9 enhancer cre1 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr17:69067578-69068777 Neighboring gene enhancer upstream of SOX9 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:69297407-69297907 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:69300220-69300720 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:69300721-69301221 Neighboring gene U6 spliceosomal RNA Neighboring gene RNA, U7 small nuclear 155 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genetic variation in prostate-specific antigen-detected prostate cancer and the effect of control selection on genetic association studies.
EBI GWAS Catalog
Genome-wide association study identifies new prostate cancer susceptibility loci.
EBI GWAS Catalog
Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.
EBI GWAS Catalog
Identification of seven new prostate cancer susceptibility loci through a genome-wide association study.
EBI GWAS Catalog
Multiple newly identified loci associated with prostate cancer susceptibility.
EBI GWAS Catalog
Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes.
EBI GWAS Catalog

General gene information

Other Names

  • cancer susceptibility 17 (non-protein coding)
  • cancer susceptibility candidate 17 (non-protein coding)
  • long intergenic non-protein coding RNA 600

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104152.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005273, BC039327, BI459971
    Related
    ENST00000569074.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    71097774..71202179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    71970472..72074817 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)