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LINC01478 long intergenic non-protein coding RNA 1478 [ Homo sapiens (human) ]

Gene ID: 101927921, updated on 17-Sep-2024

Summary

Official Symbol
LINC01478provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1478provided by HGNC
Primary source
HGNC:HGNC:51121
See related
Ensembl:ENSG00000267337 AllianceGenome:HGNC:51121
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.7) See more
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Genomic context

See LINC01478 in Genome Data Viewer
Location:
18q12.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (44323435..44531697, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (44514042..44722892, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (41903400..42111662, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 455 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr18:41921090-41922289 Neighboring gene uncharacterized LOC124904291 Neighboring gene keratin 8 pseudogene 5 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:42003750-42004339 Neighboring gene long intergenic non-protein coding RNA 1601 Neighboring gene NANOG hESC enhancer GRCh37_chr18:42132670-42133206 Neighboring gene malectin pseudogene 1 Neighboring gene uncharacterized LOC124904290 Neighboring gene NANOG hESC enhancer GRCh37_chr18:42159022-42159523

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of multiplex schizophrenia pedigrees.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110792.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC046181, AC110014
    Related
    ENST00000587877.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    44323435..44531697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    44514042..44722892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)