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LINC02421 long intergenic non-protein coding RNA 2421 [ Homo sapiens (human) ]

Gene ID: 101927901, updated on 17-Sep-2024

Summary

Official Symbol
LINC02421provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2421provided by HGNC
Primary source
HGNC:HGNC:53351
See related
Ensembl:ENSG00000255970 AllianceGenome:HGNC:53351
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02421 in Genome Data Viewer
Location:
12q15
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (67709047..67729475, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (67688562..67708992, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (68102827..68123255, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369816 Neighboring gene uncharacterized LOC124902958 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:68160813-68161536 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:68166311-68166833 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:68221514-68222713 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:68233883-68234382 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:68271051-68271551 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:68270550-68271050 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68293706-68294442 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:68294443-68295177 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:68313920-68314420 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:68314421-68314921 Neighboring gene long intergenic non-protein coding RNA 1479 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:68374855-68376054 Neighboring gene IFNG antisense RNA 1 Neighboring gene ribosomal protein L39 pseudogene 28

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110063.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022513
    Related
    ENST00000542219.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    67709047..67729475 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    67688562..67708992 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)