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LINC01508 long intergenic non-protein coding RNA 1508 [ Homo sapiens (human) ]

Gene ID: 101927873, updated on 10-Oct-2023

Summary

Official Symbol
LINC01508provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1508provided by HGNC
Primary source
HGNC:HGNC:51190
See related
Ensembl:ENSG00000231107 AllianceGenome:HGNC:51190
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 1.6), kidney (RPKM 1.0) and 4 other tissues See more
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Genomic context

See LINC01508 in Genome Data Viewer
Location:
9q22.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (90300896..90433489, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (102465902..102598496, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (93063178..93195771, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 7 subfamily E member 31 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr9:93013531-93014052 Neighboring gene olfactory receptor family 7 subfamily E member 116 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:93068547-93069046 Neighboring gene Sharpr-MPRA regulatory region 9186 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:93174359-93175096 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:93175097-93175834 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:93175835-93176572 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:93204958-93205625 Neighboring gene NANOG hESC enhancer GRCh37_chr9:93222391-93222892 Neighboring gene long intergenic non-protein coding RNA 1501 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108990 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:93375258-93375758 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr9:93375759-93376259 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20021 Neighboring gene DIRAS family GTPase 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109795.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA167811, AL161632, AL389888, BG219729
    Related
    ENST00000425666.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    90300896..90433489 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    102465902..102598496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)