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LINC01847 long intergenic non-protein coding RNA 1847 [ Homo sapiens (human) ]

Gene ID: 101927766, updated on 10-Oct-2023

Summary

Official Symbol
LINC01847provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1847provided by HGNC
Primary source
HGNC:HGNC:52662
See related
Ensembl:ENSG00000253311 AllianceGenome:HGNC:52662
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01847 in Genome Data Viewer
Location:
5q33.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (159776772..159871384, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (160305164..160399778, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (159203779..159298391, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377687 Neighboring gene uncharacterized LOC105377688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159200044-159200558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159200559-159201071 Neighboring gene NANOG hESC enhancer GRCh37_chr5:159201487-159201994 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:159205410-159206609 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16573 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:159300789-159301988 Neighboring gene adrenoceptor alpha 1B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16574 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159343446-159344062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159344063-159344679 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:159355809-159356308 Neighboring gene uncharacterized LOC101927790 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 40

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109891.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011343, AC011348
    Related
    ENST00000522627.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    159776772..159871384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    160305164..160399778 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)