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LOC101927314 uncharacterized LOC101927314 [ Homo sapiens (human) ]

Gene ID: 101927314, updated on 17-Jun-2024

Summary

Gene symbol
LOC101927314
Gene description
uncharacterized LOC101927314
See related
Ensembl:ENSG00000271860
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LOC101927314 in Genome Data Viewer
Location:
6q16.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (97305586..97708917)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (98479514..98882849)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (97753462..98156793)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17409 Neighboring gene MPRA-validated peak5969 silencer Neighboring gene MPRA-validated peak5970 silencer Neighboring gene RNA, 7SL, cytoplasmic 509, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:97439657-97440156 Neighboring gene kelch like family member 32 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24847 Neighboring gene Sharpr-MPRA regulatory region 4079 Neighboring gene VISTA enhancer hs676 Neighboring gene MPRA-validated peak5971 silencer Neighboring gene MMS22 like, DNA repair protein Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24848 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24849 Neighboring gene VISTA enhancer hs978 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:97869967-97870670 Neighboring gene uncharacterized LOC105377909 Neighboring gene VISTA enhancer hs1564 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:97972665-97973270 Neighboring gene uncharacterized LOC107986627 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98039517-98040026 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98040027-98040534 Neighboring gene VISTA enhancer hs1035 Neighboring gene VISTA enhancer hs282 Neighboring gene VISTA enhancer hs1220 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:98227185-98227961 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:98228738-98229514 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:98229515-98230289 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98232017-98232808 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98232809-98233600 Neighboring gene NANOG hESC enhancer GRCh37_chr6:98260745-98261246 Neighboring gene VISTA enhancer hs567 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98487053-98487850 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:98487851-98488648 Neighboring gene VISTA enhancer hs563 Neighboring gene VISTA enhancer hs1233 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:98536551-98537051 Neighboring gene microRNA 2113 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:98564097-98564598 Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Association of genetic markers with CSF oligoclonal bands in multiple sclerosis patients.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110757.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK091365, AL080316, AL353679, H05806
    Related
    ENST00000433637.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    97305586..97708917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    98479514..98882849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)