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lncRNA:yar yellow-achaete intergenic RNA [ Drosophila melanogaster (fruit fly) ]

Gene ID: 10178876, updated on 11-Sep-2024

Summary

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Official Symbol
lncRNA:yarprovided by FlyBase
Official Full Name
yellow-achaete intergenic RNAprovided by FlyBase
Primary source
FLYBASE:FBgn0266568
Locus tag
Dmel_CR42744
See related
AllianceGenome:FB:FBgn0266568
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-1Be; CR42744; Dmel\CR42744; lncRNA-yar; yar
Summary
Involved in regulation of circadian sleep/wake cycle, sleep. Located in cytoplasm. Is expressed in organism. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
1A5-1A6; 1-0 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (362399..367072)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (256432..261105)

Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44751 Neighboring gene yellow Neighboring gene achaete

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular analysis of the yellow locus of Drosophila. Chia W, et al. EMBO J, 1986 Dec 20. PMID 16052739, Free PMC Article
  2. Drosophila as a Model to Gain Insight into the Role of lncRNAs in Neurological Disorders. Lo Piccolo L. Adv Exp Med Biol, 2018. PMID 29951818
  3. A conserved long noncoding RNA affects sleep behavior in Drosophila. Soshnev AA, et al. Genetics, 2011 Oct. PMID 21775470, Free PMC Article
  4. Context differences reveal insulator and activator functions of a Su(Hw) binding region. Soshnev AA, et al. PLoS Genet, 2008 Aug 15. PMID 18704163, Free PMC Article
  5. Insights into the Functions of LncRNAs in Drosophila. Li K, et al. Int J Mol Sci, 2019 Sep 19. PMID 31546813, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • alternate names: anon-1Be; y-ac intergenic RNA
  • lncRNA:yar-RA; Dmel\lncRNA:yar-RA; CR42744-RA; Dmel\CR42744-RA
  • lncRNA:yar-RB; Dmel\lncRNA:yar-RB; CR42744-RB; Dmel\CR42744-RB
  • lncRNA:yar-RC; Dmel\lncRNA:yar-RC; CR42744-RC; Dmel\CR42744-RC
  • lncRNA:yar-RD; Dmel\lncRNA:yar-RD; CR42744-RD; Dmel\CR42744-RD
  • lncRNA:yar-RE; Dmel\lncRNA:yar-RE; CR42744-RE; Dmel\CR42744-RE
  • lncRNA:yar-RF; Dmel\lncRNA:yar-RF; CR42744-RF; Dmel\CR42744-RF
  • lncRNA:yar-RG; Dmel\lncRNA:yar-RG; CR42744-RG; Dmel\CR42744-RG
  • lncRNA:yar-RH; Dmel\lncRNA:yar-RH; CR42744-RH; Dmel\CR42744-RH

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in regulation of circadian sleep/wake cycle, sleep IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_004354.4 Reference assembly

    Range
    362399..367072
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_047716.1 RNA Sequence

    Status: REVIEWED

  2. NR_047717.1 RNA Sequence

    Status: REVIEWED

  3. NR_047721.1 RNA Sequence

    Status: REVIEWED

  4. NR_047718.1 RNA Sequence

    Status: REVIEWED

  5. NR_047720.1 RNA Sequence

    Status: REVIEWED

  6. NR_047719.1 RNA Sequence

    Status: REVIEWED

  7. NR_037723.1 RNA Sequence

    Status: REVIEWED

  8. NR_047722.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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