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HDAC6 histone deacetylase 6 [ Trichechus manatus latirostris (Florida manatee) ]

Gene ID: 101347918, updated on 8-Mar-2024

Summary

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Gene symbol
HDAC6
Gene description
histone deacetylase 6
See related
EnsemblRapid:ENSTMLG00000010584
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichechus manatus latirostris (sub-species: latirostris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Sirenia; Trichechidae; Trichechus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_01 current TriManLat1.0 (GCF_000243295.1) Unplaced Scaffold NW_004443982.1 (4080919..4099977, complement)

NW_004443982.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111820696 Neighboring gene proprotein convertase subtilisin/kexin type 1 inhibitor Neighboring gene ES cell expressed Ras Neighboring gene GATA binding protein 1 Neighboring gene glyoxalase domain containing 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004443982 Unplaced Scaffold Reference TriManLat1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000243295.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TriManLat1.0 Primary Assembly

Genomic

  1. NW_004443982.1 Reference TriManLat1.0 Primary Assembly

    Range
    4080919..4099977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023731872.1 → XP_023587640.1  histone deacetylase 6

    UniProtKB/TrEMBL
    A0A2Y9QWA2
    Related
    ENSTMLP00000014780.1, ENSTMLT00000015856.1
    Conserved Domains (2) summary
    pfam02148
    Location:1040 → 1102
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:482 → 832
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version

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