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ITGA6 integrin subunit alpha 6 [ Orcinus orca (killer whale) ]

Gene ID: 101271340, updated on 8-Mar-2024

Summary

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Gene symbol
ITGA6
Gene description
integrin subunit alpha 6
See related
EnsemblRapid:ENSOORG00010005932
Gene type
protein coding
RefSeq status
MODEL
Organism
Orcinus orca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Delphinidae; Orcinus
Orthologs
human mouse all
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Genomic context

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See ITGA6 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_02 current mOrcOrc1.1 (GCF_937001465.1) 7 NC_064565.1 (60547697..60623998)

Chromosome 7 - NC_064565.1Genomic Context describing neighboring genes Neighboring gene distal-less homeobox 2 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene uncharacterized LOC125964999 Neighboring gene uncharacterized LOC125964997 Neighboring gene pyruvate dehydrogenase kinase 1 Neighboring gene Rap guanine nucleotide exchange factor 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064565.1 Chromosome 7 Reference mOrcOrc1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_937001465.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOrcOrc1.1 Primary Assembly

Genomic

  1. NC_064565.1 Reference mOrcOrc1.1 Primary Assembly

    Range
    60547697..60623998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004267309.4 → XP_004267357.1  integrin alpha-6 isoform X1

    Related
    ENSOORP00010007162.1, ENSOORT00010008689.1
    Conserved Domains (2) summary
    smart00191
    Location:374 → 425
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:464 → 939
    Integrin_alpha2; Integrin alpha

  2. XM_004267310.4 → XP_004267358.1  integrin alpha-6 isoform X2

    Related
    ENSOORP00010007158.1, ENSOORT00010008685.1
    Conserved Domains (2) summary
    smart00191
    Location:374 → 425
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:464 → 939
    Integrin_alpha2; Integrin alpha
Nucleotide Protein
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