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LOC101263215 ATP-dependent zinc metalloprotease FTSH 9, chloroplastic [ Solanum lycopersicum (tomato) ]

Gene ID: 101263215, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101263215
Gene description
ATP-dependent zinc metalloprotease FTSH 9, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 6 NC_015443.3 (928773..938645, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 6 NC_015443.2 (928715..938596, complement)

Chromosome 6 - NC_015443.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112941659 Neighboring gene protein disulfide-isomerase Neighboring gene dentin sialophosphoprotein-like Neighboring gene uncharacterized LOC112941660 Neighboring gene beta-glucosidase BoGH3B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast thylakoid IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent zinc metalloprotease FTSH 9, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015443.3 Reference SL3.0 Primary Assembly

    Range
    928773..938645 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004240345.4 → XP_004240393.1  ATP-dependent zinc metalloprotease FTSH 9, chloroplastic

    UniProtKB/TrEMBL
    K4C377
    Conserved Domains (4) summary
    TIGR01241
    Location:328 → 801
    FtsH_fam; ATP-dependent metalloprotease FtsH
    pfam00004
    Location:387 → 520
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam01434
    Location:609 → 798
    Peptidase_M41; Peptidase family M41
    pfam06480
    Location:159 → 240
    FtsH_ext; FtsH Extracellular
Nucleotide Protein
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