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LOC101261426 pectinesterase/pectinesterase inhibitor PPE8B [ Solanum lycopersicum (tomato) ]

Gene ID: 101261426, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101261426
Gene description
pectinesterase/pectinesterase inhibitor PPE8B
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101261426 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
3
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 7 NC_015444.3 (7612955..7618181)
102 previous assembly SL2.50 (GCF_000188115.3) 7 NC_015444.2 (7622158..7627384)

Chromosome 7 - NC_015444.3Genomic Context describing neighboring genes Neighboring gene probable pectinesterase/pectinesterase inhibitor 13 Neighboring gene uncharacterized LOC101261132 Neighboring gene uncharacterized LOC101256103 Neighboring gene alpha-aminoadipic semialdehyde synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase/pectinesterase inhibitor PPE8B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015444.3 Reference SL3.0 Primary Assembly

    Range
    7612955..7618181
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004242853.2 → XP_004242901.1  pectinesterase/pectinesterase inhibitor PPE8B

    UniProtKB/TrEMBL
    A0A3Q7H5H2
    Conserved Domains (3) summary
    PLN02201
    Location:6 → 541
    PLN02201; probable pectinesterase/pectinesterase inhibitor
    cd15799
    Location:8 → 169
    PMEI-like_4; plant invertase/pectin methylesterase inhibitor domain-containing protein
    pfam01095
    Location:228 → 525
    Pectinesterase; Pectinesterase
Nucleotide Protein
Heading Accession and Version

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