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ABCD2 ABC transporter D family member 2 [ Solanum lycopersicum (tomato) ]

Gene ID: 101256258, updated on 9-Nov-2023

Summary

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Gene symbol
ABCD2
Gene description
ABC transporter D family member 2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
SlABCD2
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Genomic context

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See ABCD2 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 12 NC_015449.3 (6679706..6691767)
102 previous assembly SL2.50 (GCF_000188115.3) 12 NC_015449.2 (6679604..6689356)

Chromosome 12 - NC_015449.3Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 76 Neighboring gene zinc finger CCCH domain-containing protein 37 Neighboring gene putative clathrin assembly protein At5g57200 Neighboring gene uncharacterized membrane protein At1g16860 Neighboring gene GDSL esterase/lipase At5g03980

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato. Ofori PA, et al. PLoS One, 2018. PMID 30048467, Free PMC Article
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ABC transporter D family member 2; ABC transporter D family member 2, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001366439.1 → NP_001353368.1  ABC transporter D family member 2

    Status: VALIDATED

    Source sequence(s)
    AK326870
    UniProtKB/TrEMBL
    A0A3Q7J6E4
    Conserved Domains (1) summary
    COG4178
    Location:73 → 705
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015449.3 Reference SL3.0 Primary Assembly

    Range
    6679706..6691767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026028636.1 → XP_025884421.1  ABC transporter D family member 2, chloroplastic isoform X2

    Conserved Domains (1) summary
    COG4178
    Location:73 → 565
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  2. XM_019211499.2 → XP_019067044.1  ABC transporter D family member 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A3Q7J6E4
    Conserved Domains (1) summary
    COG4178
    Location:73 → 705
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  3. XM_026028634.1 → XP_025884419.1  ABC transporter D family member 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A3Q7J6E4
    Conserved Domains (1) summary
    COG4178
    Location:73 → 705
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  4. XM_026028635.1 → XP_025884420.1  ABC transporter D family member 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A3Q7J6E4
    Conserved Domains (1) summary
    COG4178
    Location:73 → 705
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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