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LOC101255111 probable trehalose-phosphate phosphatase F [ Solanum lycopersicum (tomato) ]

Gene ID: 101255111, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101255111
Gene description
probable trehalose-phosphate phosphatase F
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101255111 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 6 NC_015443.3 (38717115..38721699, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 6 NC_015443.2 (38600640..38605137, complement)

Chromosome 6 - NC_015443.3Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET1-like Neighboring gene bidirectional sugar transporter SWEET1 Neighboring gene flavin-containing monooxygenase FMO GS-OX-like 4 Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable trehalose-phosphate phosphatase F

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015443.3 Reference SL3.0 Primary Assembly

    Range
    38717115..38721699 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010324603.3 → XP_010322905.1  probable trehalose-phosphate phosphatase F

    See identical proteins and their annotated locations for XP_010322905.1

    UniProtKB/TrEMBL
    A0A3Q7GXE2
    Conserved Domains (2) summary
    TIGR01484
    Location:76 → 297
    HAD-SF-IIB; HAD-superfamily hydrolase, subfamily IIB
    cl21460
    Location:14 → 338
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_004241960.4 → XP_004242008.1  probable trehalose-phosphate phosphatase F

    See identical proteins and their annotated locations for XP_004242008.1

    UniProtKB/TrEMBL
    A0A3Q7GXE2
    Conserved Domains (2) summary
    TIGR01484
    Location:76 → 297
    HAD-SF-IIB; HAD-superfamily hydrolase, subfamily IIB
    cl21460
    Location:14 → 338
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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