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LOC101250481 delta(12)-fatty-acid desaturase [ Solanum lycopersicum (tomato) ]

Gene ID: 101250481, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101250481
Gene description
delta(12)-fatty-acid desaturase
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
SlFAD2-2
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Genomic context

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See LOC101250481 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 3 NC_015440.3 (26702061..26711362, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 3 NC_015440.2 (24479558..24488807, complement)

Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 5B-like Neighboring gene aspartic proteinase-like protein 2 Neighboring gene uncharacterized LOC101250777 Neighboring gene uncharacterized LOC101256163

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The FATTY ACID DESATURASE2 Family in Tomato Contributes to Primary Metabolism and Stress Responses. Lee MW, et al. Plant Physiol, 2020 Feb. PMID 31767693, Free PMC Article
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta(12)-fatty-acid desaturase FAD2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015440.3 Reference SL3.0 Primary Assembly

    Range
    26702061..26711362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004234725.4 → XP_004234773.1  delta(12)-fatty-acid desaturase FAD2

    See identical proteins and their annotated locations for XP_004234773.1

    UniProtKB/TrEMBL
    A0A3Q7G774
    Conserved Domains (1) summary
    PLN02505
    Location:1 → 383
    PLN02505; omega-6 fatty acid desaturase

  2. XM_026029849.1 → XP_025885634.1  delta(12)-fatty-acid desaturase FAD2

    UniProtKB/TrEMBL
    A0A3Q7G774
    Conserved Domains (1) summary
    PLN02505
    Location:1 → 383
    PLN02505; omega-6 fatty acid desaturase
Nucleotide Protein
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