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LOC101246803 trehalose-phosphate phosphatase A [ Solanum lycopersicum (tomato) ]

Gene ID: 101246803, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101246803
Gene description
trehalose-phosphate phosphatase A
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 3 NC_015440.3 (55324234..55328648, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 3 NC_015440.2 (53896149..53900561, complement)

Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene monocopper oxidase-like protein SKS1 Neighboring gene beta-fructosidase Neighboring gene uncharacterized LOC104646406 Neighboring gene BAG family molecular chaperone regulator 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables trehalose-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trehalose-phosphate phosphatase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015440.3 Reference SL3.0 Primary Assembly

    Range
    55324234..55328648 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026029940.1 → XP_025885725.1  trehalose-phosphate phosphatase A

    UniProtKB/TrEMBL
    A0A3Q7GAK5
    Conserved Domains (1) summary
    PLN02580
    Location:1 → 381
    PLN02580; trehalose-phosphatase
Nucleotide Protein
Heading Accession and Version

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